PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022855
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 277aa    MW: 31142.9 Da    PI: 6.8766
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022855genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30120179159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs ed ++++ tYegeHnh+
  DCAR_022855 120 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApNCPVKKKVQRSVEDASIIVATYEGEHNHT 179
                  58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.28115181IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-29115180IPR003657WRKY domain
SuperFamilySSF1182901.57E-25117180IPR003657WRKY domain
SMARTSM007743.2E-34120180IPR003657WRKY domain
PfamPF031061.5E-24121178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0009617Biological Processresponse to bacterium
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDSPTVNLSL GINLNSNPPH YPDDDPTDHL VEELNRMNTE NERLTKLLTV VCENYKTTQT  60
QLADLVMQKN DNNRKRVAED DIFPTNYYVE GDSYKRFKEI KTDVSRVLVR ADPSNKSLVV  120
KDGYQWRKYG QKVTRDNPSP RAYYKCSFAP NCPVKKKVQR SVEDASIIVA TYEGEHNHTM  180
SSSSPREPHQ NLVSTTSSSS PRAKSVSAGH NKDVEIDRMH QPKLCTDVVA EGTAPLVQQF  240
LVEKMASSLT RNPSFTEALA AAISTKILEY DLMDGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-211191801373WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265617.18e-79PREDICTED: probable WRKY transcription factor 40
RefseqXP_010275778.14e-79PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A061GIH62e-74A0A061GIH6_THECC; WRKY transcription factor, putative
STRINGVIT_04s0008g05760.t012e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-64WRKY DNA-binding protein 40